Index: Makefile.in
--- Makefile.in.orig	2016-02-05 16:47:55.000000000 +0100
+++ Makefile.in	2016-03-25 11:39:28.053282677 +0100
@@ -343,7 +343,7 @@
 top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
 ACLOCAL_AMFLAGS = -I m4
-SUBDIRS = 3rdparty src include samples tools unittests java
+SUBDIRS = 3rdparty src include tools
 DOCUMENTATION_FILES = documentation/Doxyfile*           \
              documentation/source                       \
              documentation/html
Index: tools/Makefile.in
--- tools/Makefile.in.orig	2016-03-25 11:39:28.053282000 +0100
+++ tools/Makefile.in	2016-03-25 11:39:52.432542122 +0100
@@ -409,7 +409,7 @@
 top_build_prefix = @top_build_prefix@
 top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
-SUBDIRS = ups_bench
+SUBDIRS = 
 COMMON = getopts.h getopts.c common.h common.c
 BOOST_LIBS = $(BOOST_SYSTEM_LIBS) $(BOOST_THREAD_LIBS)
 AM_CPPFLAGS = -I../include -I$(top_srcdir)/include -I../src \
